Bioinformatics Tools

Bioinformatics Tools

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Explore Our Bioinformatics Resources

Invaluable for carrying out sequence analysis, structural analysis, and other critical bioinformatics tasks, enabling scientists to explore, compare, and interpret biological sequences, structures, and functions efficiently.

Our curated collection includes over 60 tools across 11 categories, covering databases, genomics, immunoinformatics, structural biology, and more. Each tool is carefully selected to support cutting-edge research in life sciences.

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11

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61 tools found

NCBI

A comprehensive resource for biomedical and genomic information, including PubMed, GenBank, and many other databases.

Databases

European Nucleotide Archive (ENA)

Provides access to nucleotide sequence data from all domains of life.

Databases

EMBL-EBI

Offers freely available biological data and bioinformatics services to the scientific community.

Databases

DDBJ

DNA Data Bank of Japan; public repository for nucleotide sequences.

Databases

PlasmoDB

Malaria parasite genomics database with comprehensive analysis tools.

Databases

GISAID

Global initiative for influenza and COVID-19 genomic data sharing.

Databases

VEuPathDB

Integrated database for eukaryotic pathogens and vectors.

Databases

HBVdb

Hepatitis B virus genomics database for research and analysis.

Databases

ViPR

Viral pathogen database and analysis resource for multiple virus families.

Databases

HADDOCK Web Server

Docking for molecules, nucleic acids, and proteins with flexible interface.

Drug Design

ClusPro 2.0

A web server for protein-protein docking, providing fast and automated solutions.

Drug Design

HDOCK Server

Protein-protein and protein-DNA/RNA docking server.

Drug Design

VEuPathDB

Eukaryotic pathogen research platform with integrated tools.

Eukaryotes Bioinformatics

Galaxy

Open, web-based platform for data-intensive biomedical research with workflow tools.

Eukaryotes Bioinformatics

PATRIC

Pathosystems Resource Integration Center for bacterial bioinformatics.

Eukaryotes Bioinformatics

EggNOG

Database of orthologous gene groups and functional annotations.

Eukaryotes Bioinformatics

RAPT - NCBI

Rapid Annotation Tool for microbial genome annotation.

Eukaryotes Bioinformatics

KEGG

Kyoto Encyclopedia of Genes and Genomes for pathway mapping.

Eukaryotes Bioinformatics

PathogenFinder

Pathogenic bacteria prediction tool for genomic analysis.

Genomics

ResFinder

Antimicrobial resistance gene identification in bacterial genomes.

Genomics

KmerResistance

Resistance gene detection via k-mer based analysis.

Genomics

CARD

Comprehensive Antibiotic Resistance Database with curated sequences and detection models.

Genomics

PubMLST

Multilocus sequence typing database for bacterial population genetics.

Genomics

MLST

Web tool for bacterial multilocus sequence typing analysis.

Genomics

VirulenceFinder

Detects virulence genes in bacterial whole genome sequences.

Genomics

MAFFT

Multiple sequence alignment program for nucleotide and protein sequences.

Genomics

iTOL

Interactive Tree of Life for phylogenetic tree visualization and annotation.

Genomics

NetCTL

CTL epitope prediction combining MHC binding, proteasomal cleavage, and TAP transport.

Immunoinformatics

BCpred Server

B-cell epitope prediction using machine learning techniques.

Immunoinformatics

IEDB

Immune Epitope Database with validated and predicted epitope data.

Immunoinformatics

VaxiJen

Antigen prediction for vaccine design without sequence alignment requirement.

Immunoinformatics

BCEPRED

Linear B-cell epitope prediction using physicochemical properties.

Immunoinformatics

Scratch Protein Predictor

Suite of bioinformatics tools for protein properties and structural features.

Immunoinformatics

ExPASy ProtParam

Calculates protein physicochemical parameters from sequence.

Immunoinformatics

ProSA-web

Protein structure validation and error identification tool.

Immunoinformatics

GalaxyRefine

Protein model refinement tool for improved structure quality.

Immunoinformatics

AllerTOP

In silico allergen prediction tool for protein sequences.

Immunoinformatics

ElliPro

Antibody epitope prediction from 3D protein structure.

Immunoinformatics

iMODS

Normal mode analysis and molecular dynamics simulation server.

Immunoinformatics

C-ImmSim

Immune simulation tool for vaccine research and immunology studies.

Immunoinformatics

SOPMA

Secondary structure prediction using multiple sequence alignments.

Immunoinformatics

iBCE-EL

Linear B-cell epitope prediction combining machine learning methods.

Immunoinformatics

JINA-H

Joint Interactive Nucleotide Analysis-Helix for sequence manipulation and analysis.

Sequence Analysis

Sequence Manipulation Suite

DNA, RNA, and protein sequence analysis and manipulation tools.

Sequence Analysis

ExPASy

Bioinformatics resource portal for protein and nucleotide analysis.

Sequence Analysis

KmerFinder

K-mer identification and microbial genome characterization tool.

Metagenomics

Galaxy

Open platform for metagenomic data analysis and workflows.

Metagenomics

KBase

Systems biology and bioinformatics platform for comparative genomics.

Metagenomics

UCSC Genome Browser

Genomic data visualization and analysis gateway for multiple organisms.

Next Generation Sequencing

PATRIC

Bacterial genomes and comparative genomics resource.

Next Generation Sequencing

Galaxy

High-throughput sequencing data analysis platform.

Next Generation Sequencing

SWISS-MODEL

Protein structure modeling based on homology templates.

Structural Biology

I-TASSER

Protein structure and function prediction using homology and ab initio methods.

Structural Biology

PHYRE2

Protein fold recognition and structural modeling server.

Structural Biology

RCSB PDB

Protein Data Bank - 3D structure database for proteins and nucleic acids.

Structural Biology

AlphaFold2

AI-powered protein structure prediction via ColabFold notebook.

Structural Biology

HBVdb

Hepatitis B virus genome and genotype database.

Viral Bioinformatics

ViPR

Viral pathogen database and analysis resource.

Viral Bioinformatics

GISAID

Influenza and SARS-CoV-2 genomic data sharing platform.

Viral Bioinformatics

Galaxy

Viral genomic data analysis and workflow platform.

Viral Bioinformatics

Nextstrain

Real-time tracking of pathogen evolution and spread.

Viral Bioinformatics